A cost-efficient design for microarray image system

Ching Yu Huang

doi:10.1109/CSCI.2015.47

A cost-efficient design for microarray image system

Ching Yu Huang

Computer Information Systems

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Abstract

Image based Microarray processing has been widely applied to the biotechnology field for identifying SNP variations. In order to reduce the cost for manufacturers, a flexible design for handling different layouts of containers and different numbers of spots is necessary to accomplish the need for different throughputs on the same microarray instrument. The key to making the microarray technology successful is spot recognition during the image processing. There are many factors that could affect the quality and alignment of spots. Both high accuracy and automation in spot intensity acquisition is required to have a correct result. Here, we present a cost-efficient design that will accommodate for different spot layouts with minimal required information.

Original language	English
Title of host publication	Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015
Editors	Quoc-Nam Tran, Leonidas Deligiannidis, Hamid R. Arabnia
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	515-518
Number of pages	4
ISBN (Electronic)	9781467397957
DOIs	https://doi.org/10.1109/CSCI.2015.47
State	Published - 2 Mar 2016
Event	International Conference on Computational Science and Computational Intelligence, CSCI 2015 - Las Vegas, United States Duration: 7 Dec 2015 → 9 Dec 2015

Publication series

Name	Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015

Conference

Conference	International Conference on Computational Science and Computational Intelligence, CSCI 2015
Country/Territory	United States
City	Las Vegas
Period	7/12/15 → 9/12/15

Keywords

Container
Controls
Layout
Microarray
SNP
Spots

Access to Document

10.1109/CSCI.2015.47

Cite this

Huang, C. Y. (2016). A cost-efficient design for microarray image system. In Q.-N. Tran, L. Deligiannidis, & H. R. Arabnia (Eds.), Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015 (pp. 515-518). Article 7424146 (Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CSCI.2015.47

Huang, Ching Yu. / A cost-efficient design for microarray image system. Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015. editor / Quoc-Nam Tran ; Leonidas Deligiannidis ; Hamid R. Arabnia. Institute of Electrical and Electronics Engineers Inc., 2016. pp. 515-518 (Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015).

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title = "A cost-efficient design for microarray image system",

abstract = "Image based Microarray processing has been widely applied to the biotechnology field for identifying SNP variations. In order to reduce the cost for manufacturers, a flexible design for handling different layouts of containers and different numbers of spots is necessary to accomplish the need for different throughputs on the same microarray instrument. The key to making the microarray technology successful is spot recognition during the image processing. There are many factors that could affect the quality and alignment of spots. Both high accuracy and automation in spot intensity acquisition is required to have a correct result. Here, we present a cost-efficient design that will accommodate for different spot layouts with minimal required information.",

keywords = "Container, Controls, Layout, Microarray, SNP, Spots",

author = "Huang, \{Ching Yu\}",

note = "Publisher Copyright: {\textcopyright} 2015 IEEE.; International Conference on Computational Science and Computational Intelligence, CSCI 2015 ; Conference date: 07-12-2015 Through 09-12-2015",

year = "2016",

month = mar,

day = "2",

doi = "10.1109/CSCI.2015.47",

language = "English",

series = "Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015",

publisher = "Institute of Electrical and Electronics Engineers Inc.",

pages = "515--518",

editor = "Quoc-Nam Tran and Leonidas Deligiannidis and Arabnia, \{Hamid R.\}",

booktitle = "Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015",

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Huang, CY 2016, A cost-efficient design for microarray image system. in Q-N Tran, L Deligiannidis & HR Arabnia (eds), Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015., 7424146, Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015, Institute of Electrical and Electronics Engineers Inc., pp. 515-518, International Conference on Computational Science and Computational Intelligence, CSCI 2015, Las Vegas, United States, 7/12/15. https://doi.org/10.1109/CSCI.2015.47

A cost-efficient design for microarray image system. / Huang, Ching Yu.
Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015. ed. / Quoc-Nam Tran; Leonidas Deligiannidis; Hamid R. Arabnia. Institute of Electrical and Electronics Engineers Inc., 2016. p. 515-518 7424146 (Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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N2 - Image based Microarray processing has been widely applied to the biotechnology field for identifying SNP variations. In order to reduce the cost for manufacturers, a flexible design for handling different layouts of containers and different numbers of spots is necessary to accomplish the need for different throughputs on the same microarray instrument. The key to making the microarray technology successful is spot recognition during the image processing. There are many factors that could affect the quality and alignment of spots. Both high accuracy and automation in spot intensity acquisition is required to have a correct result. Here, we present a cost-efficient design that will accommodate for different spot layouts with minimal required information.

AB - Image based Microarray processing has been widely applied to the biotechnology field for identifying SNP variations. In order to reduce the cost for manufacturers, a flexible design for handling different layouts of containers and different numbers of spots is necessary to accomplish the need for different throughputs on the same microarray instrument. The key to making the microarray technology successful is spot recognition during the image processing. There are many factors that could affect the quality and alignment of spots. Both high accuracy and automation in spot intensity acquisition is required to have a correct result. Here, we present a cost-efficient design that will accommodate for different spot layouts with minimal required information.

KW - Container

KW - Controls

KW - Layout

KW - Microarray

KW - SNP

KW - Spots

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DO - 10.1109/CSCI.2015.47

M3 - Conference contribution

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T3 - Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015

SP - 515

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BT - Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015

A2 - Tran, Quoc-Nam

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PB - Institute of Electrical and Electronics Engineers Inc.

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Huang CY. A cost-efficient design for microarray image system. In Tran QN, Deligiannidis L, Arabnia HR, editors, Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015. Institute of Electrical and Electronics Engineers Inc. 2016. p. 515-518. 7424146. (Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015). doi: 10.1109/CSCI.2015.47

A cost-efficient design for microarray image system

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Keywords

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